Discovery and characterization of variance QTLs in human induced pluripotent stem cells

This page provides data for our paper:

Sarkar A.K.*, Tung P.*, Blischak J.D., Burnett J.E., Li Y.I., Stephens M., Gilad Y. "Discovery and characterization of variance QTLs in human induced pluripotent stem cells." biorXiv, 2018.

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Sequencing data

The single cell RNA-seq data, sample metadata, and filtered gene expression count matrix have been deposited in GEO under accession number GSE118723.

Estimated parameter matrices

The results of our ZINB model fitting are available as parameter matrices. These can be read like:

# Python
import pandas as pd
log_mu = pd.read_table('zi2-log-mu.txt.gz', index_col=0, sep=' ')
# R
log_mu <- read.table(gzfile('zi2-log-mu.txt.gz'), sep=' ')

QTL summary statistics

Author: Abhishek Sarkar

Created: 2018-08-20 Mon 12:55

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