Track Descriptions & Citations

Tracks Built into this Server

Ideogram
Cytogenetic chromosome bands. Annotations from the UCSC Genome Browser Database (cytoBand.txt.gz).

Entrez genes
mRNA sequences from NCBI RefSeq resource. Annotations from the UCSC Genome Browser Database (refGene.txt.gz, refLink.txt.gz, refSeqSummary.txt.gz). Both RefSeq short descriptions and longer summaries (for annotated genes) are searchable, but only short descriptions are displayed alongside features.

Degner, Pai, Pique-Regi et al. (2012): -log10(P), LCLs, 70 Nigerian HAPMAP ids, DNase sensitivity QTLs (dsQTLs) by DNase-seq
Click here to see original study

Schadt et al. (2007): -log10(P), liver, 427 ids, European descent
Click here to see original study

Myers et al. (2007): -log10(P), cortex from control brain, 279 ids, European descent
Click here to see original study

Stranger et al. (2007): -log10(P), LCLs, 210 HAPMAP ids, 4 single populations.
Click here to see original study

Veyrieras et al. (2008): -log10(P), LCLs, 210 HAPMAP ids, multi-population.
Click here to see original study

Veyrieras et al. (2008): posterior probability, LCLs, 210 HAPMAP ids, multi-population.
Click here to see original study

Mangravite, Engelhardt, et al. (in review): Bayes Factor, LCLs, 480 ids from Cholesterol And Pharmacogenetics (CAP) study.
Click here to see original study

Pickrell et al. (2010): -log10(P), LCLs, 69 Nigerian HAPMAP ids, RNA-Seq for eQTLs.
Click here to see original study

Gaffney et al. (2012): Posterior probability causal, LCLs, 210 multi-population HAPMAP ids, RNA-Chip for eQTLs.
Click here to see original study

Innocenti et al. (2011): Log10(Bayes Factor), Liver, 266 ids, RNA-Chip for eQTLs.
Click here to see original study

Pickrell et al. (2010): -log10(P), LCLs, 69 Nigerian HAPMAP ids, RNA-Seq for splicing QTLs.
Click here to see original study

Montgomery et al. (2010): -log10(P), LCLs, 60 European HAPMAP ids, RNA-Seq for transcript QTLs.
Click here to see original study

Zeller et al. (2010): -log10(P), Monocytes, 1,490 ids recruited in Germany.
Click here to see original study

Montgomery et al. (2010): -log10(P), LCLs, 60 European HAPMAP ids, RNA-Seq for exon QTLs.
Click here to see original study

Dimas et al. (2009): -log10(P), Fibroblasts, 75 Europeans
Click here to see original study

Dimas et al. (2009): -log10(P), LCLs, 75 Europeans
Click here to see original study

Dimas et al. (2009): -log10(P), T-cells, 75 Europeans
Click here to see original study

All putative eQTL SNPs (linked to details and colored by study and type - Hollow = cis; Solid = trans)
This track shows individual eqtl sites for all studies.


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Generic genome browser version 1.68